Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007549.1 Corchorus olitorius cultivar O-4 contig07574, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1067
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.27


Found at i:439 original size:17 final size:16

Alignment explanation


    Indices: 417--473  Score: 73
    Period size: 16  Copynumber: 3.6  Consensus size: 16

        407 TCCGAACCGT

                             
        417 ATGACCCGAACCCGAAA
          1 ATGACCCGAACCC-AAA

                             
        434 ATGACCC-AACCCAGAA
          1 ATGACCCGAACCCA-AA

            *               
        450 TTGACCCGAACCC-AA
          1 ATGACCCGAACCCAAA

                     
        465 ATGACCCGA
          1 ATGACCCGA

        474 CATTTGAACG


Statistics
Matches: 36,  Mismatches: 2, Indels: 6
        0.82            0.05        0.14

Matches are distributed among these distances:
  15   11  0.31
  16   13  0.36
  17   12  0.33

ACGTcount: A:0.39, C:0.37, G:0.16, T:0.09


Consensus pattern (16 bp):   
ATGACCCGAACCCAAA

Done.