Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007556.1 Corchorus olitorius cultivar O-4 contig07581, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1905
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:862 original size:21 final size:21

Alignment explanation


    Indices: 819--862  Score: 52
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        809 GGAGTTGCTT

                       *  *   *  
        819 AAGATGCCATTTGATCCATTG
          1 AAGATGCCATTAGACCCAATG

                         *       
        840 AAGATGCCATTAGGCCCAATG
          1 AAGATGCCATTAGACCCAATG

              
        861 AA
          1 AA

        863 AGGGCAAGAG


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25


Consensus pattern (21 bp):   
AAGATGCCATTAGACCCAATG
Done.