Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007558.1 Corchorus olitorius cultivar O-4 contig07583, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1145
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.34


Found at i:77 original size:50 final size:50

Alignment explanation


    Indices: 2--152  Score: 293
    Period size: 50  Copynumber: 3.0  Consensus size: 50

          1 A

                                                              
          2 TAAAAGGACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAATCT
          1 TAAAAGGACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAATCT

                                *                             
         52 TAAAAGGACCGTCTTCCGCTCATCCTTTGAACTGTCTACCAATTCAATCT
          1 TAAAAGGACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAATCT

                                                              
        102 TAAAAGGACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAATCT
          1 TAAAAGGACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAATCT

             
        152 T
          1 T

        153 GATATCTGGT


Statistics
Matches: 99,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  50   99  1.00

ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34


Consensus pattern (50 bp):   
TAAAAGGACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAATCT
Done.