Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007563.1 Corchorus olitorius cultivar O-4 contig07588, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1121
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27


Found at i:487 original size:27 final size:27

Alignment explanation


    Indices: 449--568  Score: 170
    Period size: 27  Copynumber: 4.4  Consensus size: 27

        439 GTACTTGAAG

                                       
        449 TGACCAAAATGCCCCTGGATGCGCAAA
          1 TGACCAAAATGCCCCTGGATGCGCAAA

                               * *     
        476 TGACCAAAATGCCCCTGGACGTGCAAA
          1 TGACCAAAATGCCCCTGGATGCGCAAA

                                     *   
        503 TGACCAAAATGCCCCTGGTCATGC-AAAA
          1 TGACCAAAATGCCCCTGG--ATGCGCAAA

                                  *     
        531 TGACCAAAATGCCCCTGGATGCACAAAA
          1 TGACCAAAATGCCCCTGGATGCGC-AAA

                      
        559 TGACCAAAAT
          1 TGACCAAAAT

        569 AACAGTAAAT


Statistics
Matches: 83,  Mismatches: 6, Indels: 7
        0.86            0.06        0.07

Matches are distributed among these distances:
  26    4  0.05
  27   43  0.52
  28   34  0.41
  29    2  0.02

ACGTcount: A:0.37, C:0.28, G:0.19, T:0.16


Consensus pattern (27 bp):   
TGACCAAAATGCCCCTGGATGCGCAAA

Done.