Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000757.1 Corchorus olitorius cultivar O-4 contig00757, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 875

Length: 1459
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32


Found at i:227 original size:76 final size:76

Alignment explanation


    Indices: 99--249  Score: 191
    Period size: 76  Copynumber: 2.0  Consensus size: 76

         89 GATGAGCTAA

                       *                                                     
         99 GACACAGCCCATCTGGGTGATCAAGCGAAACACATGGGTCTTCAGACAAACCATGTGGGCACCCA
          1 GACACAGCCCACCTGGGTGATCAAGCGAAACACATGGGTCTTCAGACAAACCATGTGGGCACCCA

                       
        164 GCTGGAGTCGT
         66 GCTGGAGTCGT

                 *            **                            *              * 
        175 GACACTGCCCACCTGGGTTCTCAAGC-AAACCACATGGGTGC-TCAAGGC-AACCATGTGGGCGC
          1 GACACAGCCCACCTGGGTGATCAAGCGAAA-CACATGGGT-CTTC-AGACAAACCATGTGGGCAC

                *        
        237 CCAGGTGGAGTCG
         63 CCAGCTGGAGTCG

        250 GGGTCCTTGT


Statistics
Matches: 65,  Mismatches: 7, Indels: 6
        0.83            0.09        0.08

Matches are distributed among these distances:
  75    3  0.05
  76   58  0.89
  77    4  0.06

ACGTcount: A:0.25, C:0.29, G:0.29, T:0.17


Consensus pattern (76 bp):   
GACACAGCCCACCTGGGTGATCAAGCGAAACACATGGGTCTTCAGACAAACCATGTGGGCACCCA
GCTGGAGTCGT
Done.