Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007571.1 Corchorus olitorius cultivar O-4 contig07596, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 790

Length: 1318
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33


Found at i:1291 original size:15 final size:15

Alignment explanation


    Indices: 1271--1300  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1261 AATATTCAAA

                           
       1271 ATCAAAATCAAAATG
          1 ATCAAAATCAAAATG

                           
       1286 ATCAAAATCAAAATG
          1 ATCAAAATCAAAATG

       1301 CTAAAGTCAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20


Consensus pattern (15 bp):   
ATCAAAATCAAAATG
Done.