Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007583.1 Corchorus olitorius cultivar O-4 contig07608, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 846

Length: 1411
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24


Found at i:1251 original size:21 final size:21

Alignment explanation


    Indices: 1226--1301  Score: 107
    Period size: 21  Copynumber: 3.6  Consensus size: 21

       1216 CCGTCCAAAG

                  *              
       1226 CCGTGCAACCACCGGTCAAGC
          1 CCGTGCCACCACCGGTCAAGC

                            *    
       1247 CCGTGCCACCACCGGTTAAGC
          1 CCGTGCCACCACCGGTCAAGC

                           *  *  
       1268 CCGTGCCACCACCGGCCATGC
          1 CCGTGCCACCACCGGTCAAGC

                    *    
       1289 CCGTGCCATCACC
          1 CCGTGCCACCACC

       1302 ATTCCAAGCC


Statistics
Matches: 49,  Mismatches: 6, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   49  1.00

ACGTcount: A:0.18, C:0.47, G:0.22, T:0.12


Consensus pattern (21 bp):   
CCGTGCCACCACCGGTCAAGC
Done.