Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007586.1 Corchorus olitorius cultivar O-4 contig07611, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 957

Length: 1596
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37


Found at i:509 original size:44 final size:44

Alignment explanation


    Indices: 446--536  Score: 173
    Period size: 44  Copynumber: 2.1  Consensus size: 44

        436 CACATGCATA

                                                        
        446 TTTTGGTTCAATTTTAAGTTTAAAGAAACTTGGGGTCGTTTTGG
          1 TTTTGGTTCAATTTTAAGTTTAAAGAAACTTGGGGTCGTTTTGG

                                        *               
        490 TTTTGGTTCAATTTTAAGTTTAAAGAAATTTGGGGTCGTTTTGG
          1 TTTTGGTTCAATTTTAAGTTTAAAGAAACTTGGGGTCGTTTTGG

               
        534 TTT
          1 TTT

        537 CGGGTTATTC


Statistics
Matches: 46,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  44   46  1.00

ACGTcount: A:0.22, C:0.05, G:0.24, T:0.48


Consensus pattern (44 bp):   
TTTTGGTTCAATTTTAAGTTTAAAGAAACTTGGGGTCGTTTTGG

Done.