Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007587.1 Corchorus olitorius cultivar O-4 contig07612, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 659

Length: 1099
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36


Found at i:437 original size:33 final size:33

Alignment explanation


    Indices: 384--464  Score: 83
    Period size: 33  Copynumber: 2.5  Consensus size: 33

        374 CTGTTTTAGA

                     *   * *                  
        384 TGTTGTTTGCGATAATACTAAACCTAATCTGA-G
          1 TGTTGTTTGTGATGACACTAAACCT-ATCTGAGG

                                  *  * * *   
        417 TGTTGTTTGTGATGACACTAAATCTGTTTTAGG
          1 TGTTGTTTGTGATGACACTAAACCTATCTGAGG

                           
        450 TGTTGTTTGTGATGA
          1 TGTTGTTTGTGATGA

        465 AACAAATTCT


Statistics
Matches: 40,  Mismatches: 7, Indels: 2
        0.82            0.14        0.04

Matches are distributed among these distances:
  32    3  0.08
  33   37  0.93

ACGTcount: A:0.23, C:0.10, G:0.23, T:0.43


Consensus pattern (33 bp):   
TGTTGTTTGTGATGACACTAAACCTATCTGAGG

Found at i:476 original size:33 final size:32

Alignment explanation


    Indices: 416--515  Score: 105
    Period size: 33  Copynumber: 3.1  Consensus size: 32

        406 CCTAATCTGA

                            *                 
        416 GTGTTGTTTGTGATGACACTAAA-TCTGTTTTAG
          1 GTGTTGTTTGTGATGAAAC-AAATTCTGTTTT-G

                                            
        449 GTGTTGTTTGTGATGAAACAAATTCTGTTTTG
          1 GTGTTGTTTGTGATGAAACAAATTCTGTTTTG

                * **                  *       
        481 GATGCTAATTGTGATGAAAACAAA-TATGTTTTG
          1 G-TGTTGTTTGTGATG-AAACAAATTCTGTTTTG

              
        514 GT
          1 GT

        516 TGATCTTAGC


Statistics
Matches: 59,  Mismatches: 5, Indels: 7
        0.83            0.07        0.10

Matches are distributed among these distances:
  32    6  0.10
  33   46  0.78
  34    7  0.12

ACGTcount: A:0.26, C:0.07, G:0.24, T:0.43


Consensus pattern (32 bp):   
GTGTTGTTTGTGATGAAACAAATTCTGTTTTG
Done.