Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000759.1 Corchorus olitorius cultivar O-4 contig00759, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 792

Length: 1320
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.27


Found at i:789 original size:25 final size:25

Alignment explanation


    Indices: 753--801  Score: 89
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        743 CCAAACAATC

                   *                 
        753 TTGAGCATTCTCGCTCGGTCTCTAT
          1 TTGAGCACTCTCGCTCGGTCTCTAT

                                    
        778 TTGAGCACTCTCGCTCGGTCTCTA
          1 TTGAGCACTCTCGCTCGGTCTCTA

        802 CAAAACAAGC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.12, C:0.31, G:0.20, T:0.37


Consensus pattern (25 bp):   
TTGAGCACTCTCGCTCGGTCTCTAT
Done.