Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007591.1 Corchorus olitorius cultivar O-4 contig07616, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 970

Length: 1618
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33


Found at i:1298 original size:16 final size:16

Alignment explanation


    Indices: 1273--1316  Score: 63
    Period size: 16  Copynumber: 2.8  Consensus size: 16

       1263 CCCGATCCCG

                         *  
       1273 CCCGAACCCGAAATTA
          1 CCCGAACCCGAAAATA

                             
       1289 CCC-AAGCCCGAAAATA
          1 CCCGAA-CCCGAAAATA

                        
       1305 CCCGAACCCGAA
          1 CCCGAACCCGAA

       1317 CCCGAAATAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 4
        0.83            0.03        0.13

Matches are distributed among these distances:
  15    2  0.08
  16   21  0.84
  17    2  0.08

ACGTcount: A:0.39, C:0.41, G:0.14, T:0.07


Consensus pattern (16 bp):   
CCCGAACCCGAAAATA

Found at i:1519 original size:10 final size:10

Alignment explanation


    Indices: 1504--1542  Score: 51
    Period size: 11  Copynumber: 3.6  Consensus size: 10

       1494 AATTACTAAA

                      
       1504 TATATATAAT
          1 TATATATAAT

                       
       1514 TATATATATAT
          1 TATATATA-AT

                        
       1525 ATATATATAACT
          1 -TATATATAA-T

                  
       1537 TATATA
          1 TATATA

       1543 ACTTAAAGCA


Statistics
Matches: 26,  Mismatches: 0, Indels: 5
        0.84            0.00        0.16

Matches are distributed among these distances:
  10    8  0.31
  11    9  0.35
  12    9  0.35

ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49


Consensus pattern (10 bp):   
TATATATAAT
Done.