Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007593.1 Corchorus olitorius cultivar O-4 contig07618, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1095
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35


Found at i:270 original size:18 final size:18

Alignment explanation


    Indices: 247--283  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        237 AAAGGGTAAT

                     *        
        247 TAAAAAAAATTGTTTTCA
          1 TAAAAAAAAGTGTTTTCA

                  *           
        265 TAAAAAGAAGTGTTTTCA
          1 TAAAAAAAAGTGTTTTCA

             
        283 T
          1 T

        284 GATAGAGGAG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38


Consensus pattern (18 bp):   
TAAAAAAAAGTGTTTTCA
Done.