Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000760.1 Corchorus olitorius cultivar O-4 contig00760, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 777

Length: 1296
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38


Found at i:768 original size:24 final size:24

Alignment explanation


    Indices: 741--794  Score: 108
    Period size: 24  Copynumber: 2.2  Consensus size: 24

        731 AAGAATACCA

                                    
        741 GATTAATTCTAACTAAATTTATCT
          1 GATTAATTCTAACTAAATTTATCT

                                    
        765 GATTAATTCTAACTAAATTTATCT
          1 GATTAATTCTAACTAAATTTATCT

                  
        789 GATTAA
          1 GATTAA

        795 ACATAAAAGT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   30  1.00

ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44


Consensus pattern (24 bp):   
GATTAATTCTAACTAAATTTATCT
Done.