Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007615.1 Corchorus olitorius cultivar O-4 contig07641, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 643

Length: 1072
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38


Found at i:248 original size:59 final size:58

Alignment explanation


    Indices: 153--268  Score: 171
    Period size: 58  Copynumber: 2.0  Consensus size: 58

        143 ATTAATCAAA

                                                           *           
        153 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAAGACGTTTTCGGACCAAGGCT
          1 TATCAAGTGACATGTTCTTTATTAGATGCAT-AAAAAAAGACGTTTTAGGACCAAGGCT

                             *            *                      *    
        212 TATCAAGTGACATGTTTTTTTATTAGATGCCT-AAAAAAGACGTTTTAGGACCGAGGC
          1 TATCAAGTGACATG-TTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACCAAGGC

        269 ATGATGCTAT


Statistics
Matches: 52,  Mismatches: 4, Indels: 3
        0.88            0.07        0.05

Matches are distributed among these distances:
  58   23  0.44
  59   14  0.27
  60   15  0.29

ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32


Consensus pattern (58 bp):   
TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACCAAGGCT
Done.