Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007624.1 Corchorus olitorius cultivar O-4 contig07650, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1353
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30


Found at i:834 original size:26 final size:26

Alignment explanation


    Indices: 798--848  Score: 66
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        788 CAAAATCTTT

                  *    *   *    *     
        798 TTACCATTTTTTTATTTTTCTAAAAC
          1 TTACCAATTTTATATGTTTCCAAAAC

                                     
        824 TTACCAATTTTATATGTTTCCAAAA
          1 TTACCAATTTTATATGTTTCCAAAA

        849 TCTTCTTTTG


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  26   21  1.00

ACGTcount: A:0.31, C:0.16, G:0.02, T:0.51


Consensus pattern (26 bp):   
TTACCAATTTTATATGTTTCCAAAAC
Done.