Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007630.1 Corchorus olitorius cultivar O-4 contig07656, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1017
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29


Found at i:357 original size:21 final size:21

Alignment explanation


    Indices: 328--382  Score: 74
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        318 GGCATTGAAT

                *             *  
        328 GGTGATGGCACGGGCATAGCC
          1 GGTGGTGGCACGGGCATAACC

                           *     
        349 GGTGGTGGCACGGGCTTAACC
          1 GGTGGTGGCACGGGCATAACC

                   *     
        370 GGTGGTGTCACGG
          1 GGTGGTGGCACGG

        383 TGAATGGCCG


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   30  1.00

ACGTcount: A:0.15, C:0.22, G:0.45, T:0.18


Consensus pattern (21 bp):   
GGTGGTGGCACGGGCATAACC
Done.