Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007631.1 Corchorus olitorius cultivar O-4 contig07657, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 969

Length: 1616
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30


Found at i:1375 original size:17 final size:17

Alignment explanation


    Indices: 1353--1387  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1343 ATATGCATGC

                             
       1353 TTTCACATTAGTTTAAT
          1 TTTCACATTAGTTTAAT

                             
       1370 TTTCACATTAGTTTAAT
          1 TTTCACATTAGTTTAAT

             
       1387 T
          1 T

       1388 AATTATAGGC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.29, C:0.11, G:0.06, T:0.54


Consensus pattern (17 bp):   
TTTCACATTAGTTTAAT
Done.