Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007632.1 Corchorus olitorius cultivar O-4 contig07658, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 769

Length: 1283
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27


Found at i:609 original size:49 final size:47

Alignment explanation


    Indices: 508--649  Score: 169
    Period size: 49  Copynumber: 3.0  Consensus size: 47

        498 GAGCGTGCCA

                        *         *         *       *      
        508 ATCAATTTTGTCAAAAAATTGATAAAAAGTGCGATGAAAATTAAAAG
          1 ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAATGAAAAATAAAAG

                                                              
        555 ATCAATTTTGTCTTAAAAATTGAGAAAAAGATGCAA-GTAAAAATAAAAG
          1 ATCAATTTTGTC-TAAAAATTGAGAAAAAG-TGCAATG-AAAAATAAAAG

            *           *                     *      *    
        604 TTCAATTTTGTAGTAAAAATTGAGAAAAAGTGCAGTGAAAAGTAAA
          1 ATCAATTTTGT-CTAAAAATTGAGAAAAAGTGCAATGAAAAATAAA

        650 GGATTGCTTG


Statistics
Matches: 82,  Mismatches: 8, Indels: 9
        0.83            0.08        0.09

Matches are distributed among these distances:
  47   12  0.15
  48   28  0.34
  49   42  0.51

ACGTcount: A:0.51, C:0.06, G:0.16, T:0.27


Consensus pattern (47 bp):   
ATCAATTTTGTCTAAAAATTGAGAAAAAGTGCAATGAAAAATAAAAG
Done.