Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007633.1 Corchorus olitorius cultivar O-4 contig07659, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1075
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42


Found at i:702 original size:166 final size:167

Alignment explanation


    Indices: 508--811  Score: 475
    Period size: 166  Copynumber: 1.8  Consensus size: 167

        498 TGATTGATTT

                                           *   *                *        *   
        508 ATTTATAGTAAAATTAAATAATCATCAATCAGTTATAACTTTGATTGGCAAAGTTAACTAATGAC
          1 ATTTATAGTAAAATTAAATAATCATCAATCAATTACAACTTTGATTGGCAAAATTAACTAACGAC

                           *                                  *              
        573 TAAATTGATTCATTTGTCTATTTAGCATGTTCAAT-AATTAATTTTTTTGGTAACATAATTACTA
         66 TAAATTGATTCATTTATCTATTTAGCATGTTCAATCAATTAATTTTTTTGCTAACATAATTACTA

                                                 
        637 ATTGATTTATTTATTTATGATAATTTTTTTGGTAGCG
        131 ATTGATTTATTTATTTATGATAATTTTTTTGGTAGCG

                  *                                                          
        674 ATTTATGGTAAAATTAAATAATCATCAATCAATTACAACTTTGATTGGCAAAATTAACTAACGAC
          1 ATTTATAGTAAAATTAAATAATCATCAATCAATTACAACTTTGATTGGCAAAATTAACTAACGAC

               *             *             *      *  *             *         
        739 TAACTTGATTCATTTATTTATTTAGCATGTTTAATCGATTTTATTTTTTTGCTAATATAATTACT
         66 TAAATTGATTCATTTATCTATTTAGCATGTTCAATC-AATTAATTTTTTTGCTAACATAATTACT

                    
        804 AATTGATT
        130 AATTGATT

        812 CGTTTATTCA


Statistics
Matches: 123,  Mismatches: 13, Indels: 2
        0.89            0.09        0.01

Matches are distributed among these distances:
 166   91  0.74
 168   32  0.26

ACGTcount: A:0.36, C:0.10, G:0.10, T:0.45


Consensus pattern (167 bp):   
ATTTATAGTAAAATTAAATAATCATCAATCAATTACAACTTTGATTGGCAAAATTAACTAACGAC
TAAATTGATTCATTTATCTATTTAGCATGTTCAATCAATTAATTTTTTTGCTAACATAATTACTA
ATTGATTTATTTATTTATGATAATTTTTTTGGTAGCG
Done.