Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007636.1 Corchorus olitorius cultivar O-4 contig07662, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1668
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:717 original size:12 final size:13

Alignment explanation


    Indices: 700--737  Score: 53
    Period size: 12  Copynumber: 3.1  Consensus size: 13

        690 TTACCTTAAT

                         
        700 TATATA-TATATA
          1 TATATACTATATA

                         
        712 TATATACTATATA
          1 TATATACTATATA

             *           
        725 -CTATACTATATA
          1 TATATACTATATA

             
        737 T
          1 T

        738 TATTTGAAAC


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  12   17  0.74
  13    6  0.26

ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47


Consensus pattern (13 bp):   
TATATACTATATA

Found at i:1005 original size:57 final size:56

Alignment explanation


    Indices: 915--1026  Score: 197
    Period size: 57  Copynumber: 2.0  Consensus size: 56

        905 ATCTGTTTTC

                                        *                            
        915 TTTCACACAATAAATGTTATAATAAATCTTATCCTCCCTATCTCTACTTAATTATTT
          1 TTTCACACAATAAATGTTATAATAAATCATATCC-CCCTATCTCTACTTAATTATTT

                                                      *            
        972 TTTCACACAATAAATGTTATAATAAATCATATCCCCCTATCTGTACTTAATTATT
          1 TTTCACACAATAAATGTTATAATAAATCATATCCCCCTATCTCTACTTAATTATT

       1027 CTACAAAATA


Statistics
Matches: 53,  Mismatches: 2, Indels: 1
        0.95            0.04        0.02

Matches are distributed among these distances:
  56   20  0.38
  57   33  0.62

ACGTcount: A:0.35, C:0.21, G:0.03, T:0.42


Consensus pattern (56 bp):   
TTTCACACAATAAATGTTATAATAAATCATATCCCCCTATCTCTACTTAATTATTT

Done.