Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007637.1 Corchorus olitorius cultivar O-4 contig07663, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 659

Length: 1099
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39


Found at i:66 original size:17 final size:17

Alignment explanation


    Indices: 44--78  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

         34 GAATCTCGGG

                             
         44 TTTTCGGGTTCGGGTCA
          1 TTTTCGGGTTCGGGTCA

                   *  *      
         61 TTTTCGGTTTTGGGTCA
          1 TTTTCGGGTTCGGGTCA

             
         78 T
          1 T

         79 GCGGTTCGGA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.06, C:0.14, G:0.31, T:0.49


Consensus pattern (17 bp):   
TTTTCGGGTTCGGGTCA
Done.