Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007656.1 Corchorus olitorius cultivar O-4 contig07682, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1041
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38


Found at i:598 original size:11 final size:11

Alignment explanation


    Indices: 582--606  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

        572 AACTTCTTTC

                       
        582 TTTTCAATTCT
          1 TTTTCAATTCT

                       
        593 TTTTCAATTCT
          1 TTTTCAATTCT

               
        604 TTT
          1 TTT

        607 CGTCATTTTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68


Consensus pattern (11 bp):   
TTTTCAATTCT
Done.