Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007659.1 Corchorus olitorius cultivar O-4 contig07685, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 647

Length: 1079
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37


Found at i:869 original size:15 final size:16

Alignment explanation


    Indices: 849--886  Score: 53
    Period size: 16  Copynumber: 2.4  Consensus size: 16

        839 CGTTCAAATG

                            
        849 TCGGGTC-ATTTGGGT
          1 TCGGGTCAATTTGGGT

                             
        864 TCGGGTCAATTCTGGGT
          1 TCGGGTCAATT-TGGGT

                   
        881 T-GGGTC
          1 TCGGGTC

        887 GTTTTCGGTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  15    7  0.33
  16    8  0.38
  17    6  0.29

ACGTcount: A:0.08, C:0.16, G:0.39, T:0.37


Consensus pattern (16 bp):   
TCGGGTCAATTTGGGT
Done.