Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007661.1 Corchorus olitorius cultivar O-4 contig07687, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928

Length: 1547
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33


Found at i:547 original size:20 final size:19

Alignment explanation


    Indices: 500--537  Score: 58
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        490 AATTCAAAAC

                                
        500 AAAATAAAAACTACCCATTT
          1 AAAAT-AAAACTACCCATTT

            *                 
        520 TAAATAAAACTACCCATT
          1 AAAATAAAACTACCCATT

        538 AAAGGATAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  19   13  0.76
  20    4  0.24

ACGTcount: A:0.53, C:0.21, G:0.00, T:0.26


Consensus pattern (19 bp):   
AAAATAAAACTACCCATTT
Done.