Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007666.1 Corchorus olitorius cultivar O-4 contig07692, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 953

Length: 1589
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29


Found at i:276 original size:19 final size:19

Alignment explanation


    Indices: 254--305  Score: 61
    Period size: 19  Copynumber: 2.8  Consensus size: 19

        244 CTGGCATAAT

                   *           
        254 GAGAAGATGGAAGAACCTC
          1 GAGAAGAAGGAAGAACCTC

                *     *    *   
        273 GAGAGGAAGGGAGAAGCTC
          1 GAGAAGAAGGAAGAACCTC

                           
        292 GAGAAGAA-GAAGAA
          1 GAGAAGAAGGAAGAA

        306 AAGAAAGGGG


Statistics
Matches: 27,  Mismatches: 6, Indels: 1
        0.79            0.18        0.03

Matches are distributed among these distances:
  18    5  0.19
  19   22  0.81

ACGTcount: A:0.46, C:0.10, G:0.38, T:0.06


Consensus pattern (19 bp):   
GAGAAGAAGGAAGAACCTC
Done.