Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007674.1 Corchorus olitorius cultivar O-4 contig07700, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 819

Length: 1366
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38


Found at i:1151 original size:15 final size:15

Alignment explanation


    Indices: 1145--1193  Score: 98
    Period size: 15  Copynumber: 3.3  Consensus size: 15

       1135 TTTGTTGTTG

                           
       1145 GATTGTTTTTGGATT
          1 GATTGTTTTTGGATT

                           
       1160 GATTGTTTTTGGATT
          1 GATTGTTTTTGGATT

                           
       1175 GATTGTTTTTGGATT
          1 GATTGTTTTTGGATT

                
       1190 GATT
          1 GATT

       1194 ATCCCCCAAT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   34  1.00

ACGTcount: A:0.14, C:0.00, G:0.27, T:0.59


Consensus pattern (15 bp):   
GATTGTTTTTGGATT
Done.