Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007681.1 Corchorus olitorius cultivar O-4 contig07707, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1071
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.41


Found at i:854 original size:25 final size:25

Alignment explanation


    Indices: 822--869  Score: 78
    Period size: 25  Copynumber: 1.9  Consensus size: 25

        812 TTTGGCCTCA

                                     
        822 GGTTACTCACGTTCTGGGTCATTCG
          1 GGTTACTCACGTTCTGGGTCATTCG

                    **             
        847 GGTTACTCGGGTTCTGGGTCATT
          1 GGTTACTCACGTTCTGGGTCATT

        870 TCAGGTTTAG


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  25   21  1.00

ACGTcount: A:0.10, C:0.21, G:0.31, T:0.38


Consensus pattern (25 bp):   
GGTTACTCACGTTCTGGGTCATTCG

Found at i:1024 original size:21 final size:22

Alignment explanation


    Indices: 1000--1041  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        990 GTTTATAATA

                *                 
       1000 TTCTTGGGTCA-TCAGGTTATC
          1 TTCTCGGGTCATTCAGGTTATC

                     *           
       1021 TTCTCGGGTTATTCAGGTTAT
          1 TTCTCGGGTCATTCAGGTTAT

       1042 GAGTTTGTCG


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  21    9  0.50
  22    9  0.50

ACGTcount: A:0.14, C:0.17, G:0.24, T:0.45


Consensus pattern (22 bp):   
TTCTCGGGTCATTCAGGTTATC
Done.