Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007685.1 Corchorus olitorius cultivar O-4 contig07711, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1142
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.41

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:678 original size:24 final size:25

Alignment explanation


    Indices: 645--701  Score: 82
    Period size: 25  Copynumber: 2.4  Consensus size: 25

        635 GTCAGCCTTG

                                 *   
        645 AATTT-TTTAATGT-TTAATTCTTA
          1 AATTTATTTAATGTCTTAATTATTA

                                    *
        668 AATTTATTTAATGTCTTAATTATTC
          1 AATTTATTTAATGTCTTAATTATTA

                     
        693 AATTTATTT
          1 AATTTATTT

        702 TACAATCCAC


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  23    5  0.17
  24    8  0.27
  25   17  0.57

ACGTcount: A:0.32, C:0.05, G:0.04, T:0.60


Consensus pattern (25 bp):   
AATTTATTTAATGTCTTAATTATTA

Done.