Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007686.1 Corchorus olitorius cultivar O-4 contig07712, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1110
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32


Found at i:319 original size:46 final size:46

Alignment explanation


    Indices: 252--339  Score: 176
    Period size: 46  Copynumber: 1.9  Consensus size: 46

        242 ACTTCTGATA

                                                          
        252 TATTTTCCCTCTATATTTCTTTGGTTCTTTGTTAATTTTTTTAATC
          1 TATTTTCCCTCTATATTTCTTTGGTTCTTTGTTAATTTTTTTAATC

                                                      
        298 TATTTTCCCTCTATATTTCTTTGGTTCTTTGTTAATTTTTTT
          1 TATTTTCCCTCTATATTTCTTTGGTTCTTTGTTAATTTTTTT

        340 TGTTTGGCAG


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   42  1.00

ACGTcount: A:0.14, C:0.15, G:0.07, T:0.65


Consensus pattern (46 bp):   
TATTTTCCCTCTATATTTCTTTGGTTCTTTGTTAATTTTTTTAATC
Done.