Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007692.1 Corchorus olitorius cultivar O-4 contig07718, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 766

Length: 1278
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.34


Found at i:692 original size:19 final size:19

Alignment explanation


    Indices: 668--723  Score: 112
    Period size: 19  Copynumber: 2.9  Consensus size: 19

        658 ACTTTGCGTA

                               
        668 AGTTCAATTCAACTAACTC
          1 AGTTCAATTCAACTAACTC

                               
        687 AGTTCAATTCAACTAACTC
          1 AGTTCAATTCAACTAACTC

                              
        706 AGTTCAATTCAACTAACT
          1 AGTTCAATTCAACTAACT

        724 TCCAAAATCA


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   37  1.00

ACGTcount: A:0.38, C:0.25, G:0.05, T:0.32


Consensus pattern (19 bp):   
AGTTCAATTCAACTAACTC
Done.