Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007698.1 Corchorus olitorius cultivar O-4 contig07724, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 856

Length: 1427
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40


Found at i:554 original size:34 final size:35

Alignment explanation


    Indices: 493--568  Score: 109
    Period size: 35  Copynumber: 2.2  Consensus size: 35

        483 AATGTAATTG

                                  *          * 
        493 TTTTTATTAGTAAACATCTTTTGTAGACTCTTTGT
          1 TTTTTATTAGTAAACATCTTTTCTAGACTCTTTAT

                           *                   
        528 TTTTTATTAGTAAACCTC-TTTCTAGACTCTTTAT
          1 TTTTTATTAGTAAACATCTTTTCTAGACTCTTTAT

                   
        562 TTGTTTA
          1 TT-TTTA

        569 GACTTTTTAG


Statistics
Matches: 37,  Mismatches: 3, Indels: 2
        0.88            0.07        0.05

Matches are distributed among these distances:
  34   16  0.43
  35   21  0.57

ACGTcount: A:0.22, C:0.13, G:0.09, T:0.55


Consensus pattern (35 bp):   
TTTTTATTAGTAAACATCTTTTCTAGACTCTTTAT
Done.