Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000771.1 Corchorus olitorius cultivar O-4 contig00771, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 829

Length: 1382
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42


Found at i:661 original size:2 final size:2

Alignment explanation


    Indices: 656--689  Score: 50
    Period size: 2  Copynumber: 16.0  Consensus size: 2

        646 TAGTACTTAC

                                                             
        656 TA TA TA TA TA GTA TA TA TA TA GTA TA TA TA TA TA
          1 TA TA TA TA TA -TA TA TA TA TA -TA TA TA TA TA TA

        690 ATAATAATAA


Statistics
Matches: 30,  Mismatches: 0, Indels: 4
        0.88            0.00        0.12

Matches are distributed among these distances:
   2   26  0.87
   3    4  0.13

ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47


Consensus pattern (2 bp):   
TA

Found at i:689 original size:13 final size:11

Alignment explanation


    Indices: 656--687  Score: 64
    Period size: 11  Copynumber: 2.9  Consensus size: 11

        646 TAGTACTTAC

                       
        656 TATATATATAG
          1 TATATATATAG

                       
        667 TATATATATAG
          1 TATATATATAG

                      
        678 TATATATATA
          1 TATATATATA

        688 TAATAATAAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   21  1.00

ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47


Consensus pattern (11 bp):   
TATATATATAG
Done.