Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007710.1 Corchorus olitorius cultivar O-4 contig07736, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 747

Length: 1246
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28


Found at i:625 original size:26 final size:27

Alignment explanation


    Indices: 584--643  Score: 68
    Period size: 27  Copynumber: 2.3  Consensus size: 27

        574 TCTTCATTAT

                       *               
        584 AGGGGTAAAATCGT-AATTTATCAATC
          1 AGGGGTAAAATAGTAAATTTATCAATC

                    *           *  *   
        610 AGGGGTAACATAGTAAATTTGTCCATC
          1 AGGGGTAAAATAGTAAATTTATCAATC

             *     
        637 ACGGGTA
          1 AGGGGTA

        644 TTTTTGGTAA


Statistics
Matches: 28,  Mismatches: 5, Indels: 1
        0.82            0.15        0.03

Matches are distributed among these distances:
  26   12  0.43
  27   16  0.57

ACGTcount: A:0.35, C:0.13, G:0.23, T:0.28


Consensus pattern (27 bp):   
AGGGGTAAAATAGTAAATTTATCAATC

Done.