Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007713.1 Corchorus olitorius cultivar O-4 contig07739, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1101
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30


Found at i:423 original size:23 final size:23

Alignment explanation


    Indices: 385--428  Score: 72
    Period size: 23  Copynumber: 1.9  Consensus size: 23

        375 TCTTGAAATT

                                    
        385 TGAAAACTTTGATGATGAGATGGA
          1 TGAAAACTTTGATGAT-AGATGGA

                                 
        409 TGAAAAC-TTGATGATAGATG
          1 TGAAAACTTTGATGATAGATG

        429 AATAGAAGGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  22    5  0.25
  23    8  0.40
  24    7  0.35

ACGTcount: A:0.39, C:0.05, G:0.27, T:0.30


Consensus pattern (23 bp):   
TGAAAACTTTGATGATAGATGGA
Done.