Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007717.1 Corchorus olitorius cultivar O-4 contig07743, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 744

Length: 1240
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38


Found at i:40 original size:10 final size:10

Alignment explanation


    Indices: 25--67  Score: 63
    Period size: 10  Copynumber: 4.5  Consensus size: 10

         15 TCCCCGAAAT

                      
         25 ATTATTTTTA
          1 ATTATTTTTA

                      
         35 ATTA--TTTA
          1 ATTATTTTTA

              *       
         43 ATAATTTTTA
          1 ATTATTTTTA

                      
         53 ATTATTTTTA
          1 ATTATTTTTA

                 
         63 ATTAT
          1 ATTAT

         68 AGGCATATAT


Statistics
Matches: 29,  Mismatches: 2, Indels: 4
        0.83            0.06        0.11

Matches are distributed among these distances:
   8    7  0.24
  10   22  0.76

ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65


Consensus pattern (10 bp):   
ATTATTTTTA
Done.