Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007718.1 Corchorus olitorius cultivar O-4 contig07744, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 876

Length: 1460
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34


Found at i:963 original size:13 final size:13

Alignment explanation


    Indices: 945--973  Score: 58
    Period size: 13  Copynumber: 2.2  Consensus size: 13

        935 AATTAACCAA

                         
        945 GTAAATACATTAT
          1 GTAAATACATTAT

                         
        958 GTAAATACATTAT
          1 GTAAATACATTAT

               
        971 GTA
          1 GTA

        974 TGTTCCTGAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38


Consensus pattern (13 bp):   
GTAAATACATTAT
Done.