Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007719.1 Corchorus olitorius cultivar O-4 contig07745, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 763

Length: 1273
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:1094 original size:15 final size:14

Alignment explanation


    Indices: 1056--1094  Score: 51
    Period size: 15  Copynumber: 2.7  Consensus size: 14

       1046 TGACCCCCGG

                          
       1056 ATTTATTTTTTATT
          1 ATTTATTTTTTATT

                **         
       1070 ATTGCGTTTTTTATT
          1 ATT-TATTTTTTATT

                      
       1085 ATTTATTTTT
          1 ATTTATTTTT

       1095 CCTAGTTGGA


Statistics
Matches: 20,  Mismatches: 4, Indels: 2
        0.77            0.15        0.08

Matches are distributed among these distances:
  14    8  0.40
  15   12  0.60

ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74


Consensus pattern (14 bp):   
ATTTATTTTTTATT
Done.