Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01007722.1 Corchorus olitorius cultivar O-4 contig07748, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5662

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
414--450
18
2.1
18
89
0
56
10
21
48
18
1.78
1341--1453
53
2.1
53
93
0
190
38
26
13
22
1.91
1481--1521
21
1.9
22
85
5
57
29
0
4
65
1.13
2001--2066
31
2.1
31
91
0
105
42
16
7
33
1.77
2739--2802
30
2.1
30
82
0
74
42
9
6
42
1.62
3244--3290
24
2.0
24
100
0
94
8
34
2
55
1.42
3248--3310
24
2.7
24
87
2
83
7
38
3
50
1.47
3908--3973
33
1.9
34
87
6
98
12
9
31
46
1.72
3936--3995
22
2.7
22
92
0
93
11
8
31
48
1.69
4961--5094
66
2.0
66
100
0
268
38
13
10
37
1.79

Tables:   1

The End!