Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007727.1 Corchorus olitorius cultivar O-4 contig07753, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1005
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36


Found at i:71 original size:12 final size:11

Alignment explanation


    Indices: 56--91  Score: 54
    Period size: 12  Copynumber: 3.1  Consensus size: 11

         46 AGGAGTAGGG

                        
         56 TCCTTCCTTAGC
          1 TCCTTCC-TAGC

                       
         68 TCCTTCCTAGC
          1 TCCTTCCTAGC

                        
         79 TACCTTCCTAGC
          1 T-CCTTCCTAGC

             
         91 T
          1 T

         92 TTTTCCTTTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  11    5  0.22
  12   18  0.78

ACGTcount: A:0.11, C:0.42, G:0.08, T:0.39


Consensus pattern (11 bp):   
TCCTTCCTAGC

Found at i:592 original size:25 final size:24

Alignment explanation


    Indices: 556--602  Score: 69
    Period size: 26  Copynumber: 1.9  Consensus size: 24

        546 TCCTTCTATT

                                    
        556 CATCTATCATC-AAGTTTTTCATC
          1 CATCTATCATCAAAGTTTTTCATC

                                    
        579 CATCTCATCCATCAAAGTTTTTCA
          1 CATCT-AT-CATCAAAGTTTTTCA

        603 AATTTTCAAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  23    5  0.24
  24    2  0.10
  25    4  0.19
  26   10  0.48

ACGTcount: A:0.28, C:0.28, G:0.04, T:0.40


Consensus pattern (24 bp):   
CATCTATCATCAAAGTTTTTCATC

Done.