Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007728.1 Corchorus olitorius cultivar O-4 contig07754, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1165
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33


Found at i:84 original size:24 final size:23

Alignment explanation


    Indices: 49--93  Score: 65
    Period size: 25  Copynumber: 1.9  Consensus size: 23

         39 TCCTTCTATT

                                   
         49 CATCTATCATC-AAGTTTTCATC
          1 CATCTATCATCAAAGTTTTCATC

                                   
         71 CATCTCATCCATCAAAGTTTTCA
          1 CATCT-AT-CATCAAAGTTTTCA

         94 AATTTTCAAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  22    5  0.25
  23    2  0.10
  24    4  0.20
  25    9  0.45

ACGTcount: A:0.29, C:0.29, G:0.04, T:0.38


Consensus pattern (23 bp):   
CATCTATCATCAAAGTTTTCATC

Done.