Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007735.1 Corchorus olitorius cultivar O-4 contig07761, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1694
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29


Found at i:1637 original size:21 final size:21

Alignment explanation


    Indices: 1612--1651  Score: 80
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1602 TTGTAAAAGC

                                 
       1612 TTGAAACCTTGGGGTTTCAAA
          1 TTGAAACCTTGGGGTTTCAAA

                               
       1633 TTGAAACCTTGGGGTTTCA
          1 TTGAAACCTTGGGGTTTCA

       1652 TATATCCAAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35


Consensus pattern (21 bp):   
TTGAAACCTTGGGGTTTCAAA
Done.