Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007738.1 Corchorus olitorius cultivar O-4 contig07764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 840

Length: 1401
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36


Found at i:180 original size:21 final size:20

Alignment explanation


    Indices: 140--186  Score: 76
    Period size: 20  Copynumber: 2.3  Consensus size: 20

        130 TATTAATATC

                                
        140 TTTTTCCTGCATCCCATTTT
          1 TTTTTCCTGCATCCCATTTT

                         *      
        160 TTTTTCCTGCATCTCATTTT
          1 TTTTTCCTGCATCCCATTTT

                   
        180 TTCTTTC
          1 TT-TTTC

        187 TCATGTGCCC


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  20   21  0.84
  21    4  0.16

ACGTcount: A:0.09, C:0.28, G:0.04, T:0.60


Consensus pattern (20 bp):   
TTTTTCCTGCATCCCATTTT

Found at i:602 original size:17 final size:17

Alignment explanation


    Indices: 580--619  Score: 55
    Period size: 17  Copynumber: 2.4  Consensus size: 17

        570 AGATTACCAT

                            * 
        580 TGATCTT-GCATCACTGG
          1 TGATCTTAG-ATCACTAG

                             
        597 TGATCTTAGATCACTAG
          1 TGATCTTAGATCACTAG

                  
        614 TGATCT
          1 TGATCT

        620 GGGGGGTGAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  17   20  0.95
  18    1  0.05

ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38


Consensus pattern (17 bp):   
TGATCTTAGATCACTAG
Done.