Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007739.1 Corchorus olitorius cultivar O-4 contig07765, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1726
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:81 original size:33 final size:33

Alignment explanation


    Indices: 44--162  Score: 148
    Period size: 33  Copynumber: 3.6  Consensus size: 33

         34 CCAAGATCAT

                     *                   **  
         44 GCCGCCCACTGAGGGCGGCATCCCCATGGTGAC
          1 GCCGCCCACCGAGGGCGGCATCCCCATGGCCAC

                   *  **         **          
         77 GCCGCCCTCCTTGGGCGGCATGACCATGGCCAC
          1 GCCGCCCACCGAGGGCGGCATCCCCATGGCCAC

                       *                     
        110 GCCGCCCACCGGGGGCGGCATCCCCATGGCCAC
          1 GCCGCCCACCGAGGGCGGCATCCCCATGGCCAC

                      *         
        143 GCCGCCCACCAAGGGCGGCA
          1 GCCGCCCACCGAGGGCGGCA

        163 CCGACCATTT


Statistics
Matches: 71,  Mismatches: 15, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  33   71  1.00

ACGTcount: A:0.14, C:0.44, G:0.33, T:0.09


Consensus pattern (33 bp):   
GCCGCCCACCGAGGGCGGCATCCCCATGGCCAC
Done.