Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000774.1 Corchorus olitorius cultivar O-4 contig00774, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5505
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27


Found at i:4205 original size:54 final size:54

Alignment explanation


    Indices: 4136--4243  Score: 198
    Period size: 54  Copynumber: 2.0  Consensus size: 54

       4126 GGGTAGAGGT

                                                                  
       4136 CGCTTACTATCTCAACCAATCACTTGTTGGTTATCCCTTTGATAAGACTGAACC
          1 CGCTTACTATCTCAACCAATCACTTGTTGGTTATCCCTTTGATAAGACTGAACC

                  *   *                                           
       4190 CGCTTATTATTTCAACCAATCACTTGTTGGTTATCCCTTTGATAAGACTGAACC
          1 CGCTTACTATCTCAACCAATCACTTGTTGGTTATCCCTTTGATAAGACTGAACC

       4244 AAATATATTA


Statistics
Matches: 52,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  54   52  1.00

ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35


Consensus pattern (54 bp):   
CGCTTACTATCTCAACCAATCACTTGTTGGTTATCCCTTTGATAAGACTGAACC
Done.