Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007741.1 Corchorus olitorius cultivar O-4 contig07767, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 611

Length: 1019
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32


Found at i:790 original size:51 final size:50

Alignment explanation


    Indices: 690--791  Score: 127
    Period size: 51  Copynumber: 2.0  Consensus size: 50

        680 GTTCTTCATA

                                                      ***     
        690 TTTTTCTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCTTTTAGTGT
          1 TTTTTCTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCTACAAGTGT

                                                       *         
        740 TTTTCTCTTGTTTCA-ATCTTGTCTCCGGACATAA-AAACACTGTACAAGTGT
          1 TTTT-TCTTGTTT-AGATCTTGTCTCCGGACA-AACAAACACTCTACAAGTGT

             
        791 T
          1 T

        792 CTTCATTCAG


Statistics
Matches: 45,  Mismatches: 4, Indels: 5
        0.83            0.07        0.09

Matches are distributed among these distances:
  50    4  0.09
  51   38  0.84
  52    3  0.07

ACGTcount: A:0.24, C:0.21, G:0.14, T:0.42


Consensus pattern (50 bp):   
TTTTTCTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCTACAAGTGT
Done.