Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007743.1 Corchorus olitorius cultivar O-4 contig07769, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1056
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38


Found at i:590 original size:50 final size:50

Alignment explanation


    Indices: 523--620  Score: 178
    Period size: 50  Copynumber: 2.0  Consensus size: 50

        513 CATCTTATAA

                                                              
        523 TTTTTTTTAATAACCTAAAAACATTTCTAGTAACCGTATCAAGTTTTAAT
          1 TTTTTTTTAATAACCTAAAAACATTTCTAGTAACCGTATCAAGTTTTAAT

                                  *   *                     
        573 TTTTTTTTAATAACCTAAAAACTTTTTTAGTAACCGTATCAAGTTTTA
          1 TTTTTTTTAATAACCTAAAAACATTTCTAGTAACCGTATCAAGTTTTA

        621 TAGTAATCTT


Statistics
Matches: 46,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  50   46  1.00

ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46


Consensus pattern (50 bp):   
TTTTTTTTAATAACCTAAAAACATTTCTAGTAACCGTATCAAGTTTTAAT
Done.