Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007744.1 Corchorus olitorius cultivar O-4 contig07770, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 644

Length: 1074
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.40

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:267 original size:17 final size:17

Alignment explanation


    Indices: 241--274  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        231 TAATCTTATT

                 *           
        241 TAATATTTATTCATATA
          1 TAATAATTATTCATATA

                             
        258 TAATAATTATTCATATA
          1 TAATAATTATTCATATA

        275 ATGAAGTTTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50


Consensus pattern (17 bp):   
TAATAATTATTCATATA
Done.