Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000775.1 Corchorus olitorius cultivar O-4 contig00775, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 891

Length: 1486
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38


Found at i:686 original size:44 final size:44

Alignment explanation


    Indices: 623--711  Score: 178
    Period size: 44  Copynumber: 2.0  Consensus size: 44

        613 GTCTTTTTTT

                                                        
        623 AGGCATCTAATAAAAAACATGTCACTCGAAGCCTTGGTCCTAAA
          1 AGGCATCTAATAAAAAACATGTCACTCGAAGCCTTGGTCCTAAA

                                                        
        667 AGGCATCTAATAAAAAACATGTCACTCGAAGCCTTGGTCCTAAA
          1 AGGCATCTAATAAAAAACATGTCACTCGAAGCCTTGGTCCTAAA

             
        711 A
          1 A

        712 CGTCTTTTTT


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   45  1.00

ACGTcount: A:0.39, C:0.22, G:0.16, T:0.22


Consensus pattern (44 bp):   
AGGCATCTAATAAAAAACATGTCACTCGAAGCCTTGGTCCTAAA
Done.