Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007758.1 Corchorus olitorius cultivar O-4 contig07784, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1012
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26


Found at i:857 original size:17 final size:16

Alignment explanation


    Indices: 805--853  Score: 62
    Period size: 17  Copynumber: 2.9  Consensus size: 16

        795 TCACCCCCAA

                 *           
        805 ATCACTAGTGATCTAAG
          1 ATCACCAGTGATC-AAG

                             
        822 ATCACCAGTGATGCAAG
          1 ATCACCAGTGAT-CAAG

                  *        
        839 ATCACCGGTGATCAA
          1 ATCACCAGTGATCAA

        854 AGATTACATG


Statistics
Matches: 29,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  16    3  0.10
  17   25  0.86
  18    1  0.03

ACGTcount: A:0.35, C:0.22, G:0.20, T:0.22


Consensus pattern (16 bp):   
ATCACCAGTGATCAAG
Done.