Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007764.1 Corchorus olitorius cultivar O-4 contig07790, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2315
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37


Found at i:190 original size:2 final size:2

Alignment explanation


    Indices: 183--213  Score: 53
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        173 TACGTATTAT

                                                         
        183 TA TA TA TA TA TA TA TA TA TA TA CTA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA

        214 AAAGTACGAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   2   26  0.93
   3    2  0.07

ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48


Consensus pattern (2 bp):   
TA

Found at i:359 original size:25 final size:25

Alignment explanation


    Indices: 330--380  Score: 75
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        320 ATGAAAATAT

                                 *   
        330 ATAAAATTACCATTAATAAAATTTA
          1 ATAAAATTACCATTAATAAAAATTA

                    *      *         
        355 ATAAAATTGCCATTATTAAAAATTA
          1 ATAAAATTACCATTAATAAAAATTA

             
        380 A
          1 A

        381 ATTTCAATTC


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35


Consensus pattern (25 bp):   
ATAAAATTACCATTAATAAAAATTA
Done.